Publications


Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity,
Dominik Schrempf, Bui Quang Minh, Arndt von Haeseler, Carolin Kosiol,
Molecular Biology and Evolution, msz043, doi:10.1093/molbev/msz043

Release from intralocus sexual conflict? Evolved loss of a male sexual trait demasculinizes female gene expression. 
Rayner JG, Pascoal S, Bailey NW.
Proc. R. Soc. B 286: 20190497. doi:10.1098/rspb.2019.0497

On simulated annealing phase transitions in phylogeny reconstruction.
Strobl MAR, Barker D
Molec. Phylogenet. Evol. Volume 101, August 2016, Pages 46–55 doi:10.1016/j.ympev.2016.05.001

Plasmodium knowlesi Genome Sequences from Clinical Isolates Reveal Extensive Genomic Dimorphism.
Pinheiro MM, Ahmed MA, Millar SB, Sanderson T, Otto TD, Lu WC, Krishna S, Rayner JC, Cox-Singh J
PLoS One. 2015 Apr 1;10(4):e0121303. doi: 10.1371/journal.pone.0121303. eCollection 2015.

Genomic investigations unmask Mycoplasma amphoriforme, a new respiratory pathogen.
Gillespie SH, Ling CL, Oravcova K, Pinheiro M, Wells L, Bryant JM, McHugh TD, Bébéar C, Webster D, Harris SR, Seth-Smith HM, Thomson NR.
Clin Infect Dis. 2014 doi: 10.1093/cid/ciu820

Disease progression in Plasmodium knowlesi malaria is linked to variation in invasion gene family members.
Ahmed AM, Pinheiro MM, Divis PC, Siner A, Zainudin R, Wong IT, Lu CW, Singh-Khaira SK, Millar SB, Lynch S, Willmann M, Singh B, Krishna S, Cox-Singh J
PLoS Negl Trop Dis. 2014; 8:e3086. doi: 10.1371/journal.pntd.0003086