Publications

Publications listed below are in most recent publication order for all researchers within the St Andrews Bioinformatics community

100 (of 102 /dk/atira/pure/researchoutput/status/published available) for St Andrews Bioinformatics Unit (source: University of St Andrews PURE)
Please click title of any item for full details

The indirect genetic effect interaction coefficient ψ Nathan William Bailey, Camille Desjonqueres
Journal of Heredity 2022 vol. 113 pp. 79–90
Bringing bioinformatics to schools with the 4273pi project Stevie Bain, Heleen Plaisier, Felicity Anderson, Nicola Cook, Kathryn Crouch, Thomas Robert Meagher, Michael Gordon Ritchie, Edward Wallace, Daniel Barker
PLoS Computational Biology 2022 vol. 18
Nucleotide usage biases distort inferences of the species tree Rui Borges, Bastien Boussau, Gergely J Szöllősi, Carolin Kosiol
Genome Biology and Evolution 2022 vol. 14
KIAA0319 influences cilia length, cell migration and mechanical cell-substrate interaction Nils Michael Kronenberg, Angela Martinelli, Andrew Clive Riches, Malte Christian Gather, Silvia Paracchini
Scientific Reports 2022 vol. 12
Contradictory phylogenetic signals in the laurasiatheria anomaly zone Liliya Doronina, Graham M. Hughes, Diana Moreno-Santillan, Colleen Lawless, Tadhg Lonergan, Louise Ryan, David Jebb, Bogdan M. Kirilenko, Jennifer M. Korstian, Liliana M. Dávalos, Sonja Vernes, Eugene W. Myers, Emma C. Teeling, Michael Hiller, Lars S. Jermiin, Jürgen Schmitz, Mark S. Springer, David A. Ray
Genes 2022 vol. 13
The era of reference genomes in conservation genomics Giulio Formenti, Kathrin Theissinger, Carlos Fernandes, Iliana Bista, Aureliano Bombarely, Christoph Bleidorn, Claudio Ciofi, Angelica Crottini, José A. Godoy, Jacob Höglund, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María J. Ruiz-López, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann-Marie Waldvogel, Guojie Zhang, Camila J. Mazzoni, Erich D. Jarvis, Miklós Bálint, Fedor Čiampor, Jacob Hoglund, Per Palsbøll, María José Ruiz-López, Goujie Zhang, Erich Jarvis, Sargis A. Aghayan, Tyler S. Alioto, Isabel Almudi, Nadir Alvarez, Paulo C. Alves, Isabel R. Amorim, Agostinho Antunes, Paula Arribas, Petr Baldrian, Paul R. Berg, Giorgio Bertorelle, Astrid Böhne, Andrea Bonisoli-Alquati, Ljudevit L. Boštjančić, Bastien Boussau, Catherine M. Breton, Elena Buzan, Paula F. Campos, Sonja Vernes,
Trends in Ecology & Evolution 2022 vol. 37 pp. 197-202
Bayesian Networks as a novel tool to enhance interpretability and predictive power of ecological models Richard Stafford, Iain McCombe Matthews, V Anne Smith
Ecological Informatics 2022 vol. 68
Population viscosity promotes altruism under density-dependent dispersal Jasmeen Kaur Kanwal, Andy Gardner
Proceedings of the Royal Society of London Series B: Biological Sciences 2022 vol. 289
Emergence of methicillin resistance predates the clinical use of antibiotics Jesper Larsen, Claire L Raisen, Xiaoliang Ba, Nicholas J Sadgrove, Guillermo F Padilla-González, Monique S J Simmonds, Igor Loncaric, Heidrun Kerschner, Petra Apfalter, Rainer Hartl, Ariane Deplano, Stien Vandendriessche, Barbora Černá Bolfíková, Pavel Hulva, Maiken C Arendrup, Rasmus K Hare, Céline Barnadas, Marc Stegger, Raphael N Sieber, Robert L Skov, Andreas Petersen, Øystein Angen, Sophie L Rasmussen, Carmen Espinosa-Gongora, Frank M Aarestrup, Laura J Lindholm, Suvi M Nykäsenoja, Frederic Laurent, Karsten Becker, Birgit Walther, Corinna Kehrenberg, Christiane Cuny, Franziska Layer, Guido Werner, Wolfgang Witte, Ivonne Stamm, Paolo Moroni, Hannah J Jørgensen, Hermínia de Lencastre, Emilia Cercenado, Fernando García-Garrote, Stefan Börjesson, Sara Hæggman, Vincent Perreten, Christopher J Teale, Andrew S Waller, Bruno Pichon, Martin D Curran, Matthew J Ellington, John J Welch, Sharon J Peacock, David J Seilly, Fiona J E Morgan, Julian Parkhill, Nazreen F Hadjirin, Jodi A Lindsay, Matthew Holden, Giles F Edwards, Geoffrey Foster, Gavin K Paterson, Xavier Didelot, Mark A Holmes, Ewan M Harrison, Anders R Larsen
Nature 2022 vol. 602 pp. 135-141
Degree correlations in graphs with clique clustering V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2022 vol. 105
Presence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing Martin Patrick McHugh, Kerry Andrea Pettigrew, Geoff Toner, Elham Khatamzas, Noha el Sakka, Anne Marie Karcher, Joanna Walker, Robert Weir, Danièle Meunier, Katie L. Hopkins, Neil Woodford, Kate E. Templeton, Stephen Henry Gillespie, Matthew Holden
Microbiology 2022 vol. 168
Insights into the genetics of the Zhonghua 11 Resistance to Meloidogyne graminicola and its molecular determinism in rice Hue Thi Nguyen, Sophie Mantelin, Cuong Viet Ha, Mathias Lorieux, John Jones, Chung Duc Mai, Stéphane Bellafiore
Frontiers in Plant Science 2022 vol. 13
De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members Peter Jacob Thorpe, Ernest D. Benavente, Susanna Campino, Muh Fauzi, Robert W. Moon, Taane G. Clark, Janet Cox-Singh
Frontiers in Genetics 2022 vol. 13
Handedness in twins Lena Sophie Pfeifer, Judith Schmitz, Marietta Papadatou-Pastou, Jutta Peterburs, Silvia Paracchini, Sebastian Ocklenburg
BMC Psychology 2022 vol. 10
Life Sciences New Talent collection Malcolm White, Steve Brown
Royal Society Open Science 2022 vol. 9
A synthesis of senescence predictions for indeterminate growth, and support from multiple tests in wild lake trout Craig F Purchase, Anna C Rooke, Michael J Gaudry, Jason R Treberg, Lizy Mittell, Michael Blair Morrissey, Michael D Rennie
Proceedings. Biological sciences 2022 vol. 289
Quantitative multidimensional phenotypes improve genetic analysis of laterality traits Judith Schmitz, Mo Zheng, Kelvin F. H. Lui, Catherine McBride, Connie S.-H. Ho, Silvia Paracchini
Translational Psychiatry 2022 vol. 12
World Society for Virology first international conference Maria Söderlund-Venermo, Anupam Varma, Deyin Guo, Douglas P. Gladue, Emma L. Poole, Flor H. Pujol, Hanu Pappu, Jesús L. Romalde, Laura Kramer, Mariana Baz, Marietjie Venter, Michael Martin Nevels, Sayeh Ezzikouri, Vikram N. Vakharia, William C. Wilson, Yashpal S. Malik, Zhengli Shi, Ahmed S. Abdel-Moneim
Virology 2022 vol. 566 pp. 114-121
Evolutionary diversification of the canonical Wnt signaling effector TCF/LEF in chordates Nuria Torres, Marika Salonna, Stefan Hoppler, David Ellard Keith Ferrier
Development, Growth & Differentiation 2022 vol. 64 pp. 120-137
A Bayesian network structure learning approach to identify genes associated with stress in spleens of chickens Emiliano Ariel Videla Rodriguez, John B. O. Mitchell, V Anne Smith
Scientific Reports 2022 vol. 12
Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR) Benon Asiimwe, John Kiiru, Stephen Mshana, Stella Neema, Katherine Lisa Keenan, Mike Kesby, Joseph R. Mwanga, Derek James Sloan, Blandina T. Mmbaga, V Anne Smith, Stephen Henry Gillespie, Andy Lynch, Alison Fiona Sandeman, John Stelling, Alison Elliott, David M. Aanensen, Gibson E. Kibiki, Wilber Sabiiti, Matthew Holden,
BMJ Open 2021 vol. 11
Cyclic oligoadenylate signaling and regulation by ring nucleases during type III CRISPR defense Januka Sahan Athukoralage, Malcolm White
RNA 2021 vol. 27 pp. 855-867
A neglected conceptual problem regarding phenotypic plasticity’s role in adaptive evolution Nathan William Bailey, Camille Desjonqueres, Jack Gregory Rayner, Xiao Zhang
Evolution Letters 2021 vol. 5 pp. 444-457
The distinction between repeatability and correlation in studies of animal behaviour Miguel Borges Da Costa Guint Barbosa, Michael Blair Morrissey
Animal Behaviour 2021 vol. 175 pp. 201-217
Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405 Janine T. Bossé, Yanwen Li, Liza Miriam Cohen, Marc Stegger, Øystein Angen, Sonia Lacouture, Marcelo Gottschalk, Liancheng Lei, Miriam Koene, Peter Kuhnert, Aloka B. Bandara, Thomas J. Inzana, Matthew Holden, David Harris, Olusegun Oshota, Duncan J. Maskell, Alexander W. Tucker, Brendan W. Wren, Andrew N. Rycroft, Paul R. Langford,
Microbial Genomics 2021 vol. 7
Rationally designed mariner vectors for functional genomic analysis of Actinobacillus pleuropneumoniae and other Pasteurellaceae species by transposon-directed insertion-site sequencing (TraDIS) Janine T. Bossé, Yanwen Li, Leon G. Leanse, Liqing Zhou, Roy R. Chaudhuri, Sarah E. Peters, Jinhong Wang, Gareth A. Maglennon, Matthew Holden, Duncan J. Maskell, Alexander W. Tucker, Brendan W. Wren, Andrew N. Rycroft, Paul R. Langford, Alexander W. (. Dan) Tucker, Lucy A. Weinert, Jinhong (. Tracy) Wang, Shi-Lu Luan, Jessica Beddow, Jon Cuccui, Vanessa S. Terra, on behalf of the BRaDP1T consortium
Animal Diseases 2021 vol. 1
What is the role of HLA-I on cancer derived extracellular vesicles? Defining the challenges in characterisation and potential uses of this ligandome Caitlin Boyne, Simon John Powis, Pankaj Kumar
International Journal of Molecular Sciences 2021 vol. 22
Speciation in the deep Emma Louise Carroll, Michael R. McGowen, Morgan L. McCarthy, Felix G. Marx, Natacha Aguilar, Merel L. Dalebout, Sascha Dreyer, Oscar Eduardo Gaggiotti, Sabine S. Hansen, Anton van Helden, Aubrie Onoufriou, Robin W. Baird, C. Scott Baker, Simon Berrow, Danielle Cholewiak, Rochelle Constantine, Nicholas J. Davison, Catarina Eira, R. Ewan Fordyce, John Gatesy, G. J. Greg Hofmeyr, Vidal Martín, James G. Mead, Antonio A. Mignucci-Giannoni, Phillip A. Morin, Cristel Reyes, Emer Rogan, Massimiliano Rosso, Mark S. Springer, Debbie Steel, Morten Tange Olsen
Proceedings of the Royal Society B: Biological Sciences 2021 vol. 288
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014 J Chilam, S Argimon, MT Limas, ML Masim, JM Gayeta, ML Lagrada, AM Olorosa, V Cohen, LT Hernandez, B Jeffrey, K Abudahab, CM Hufano, SB Sia, Matthew Holden, J Stelling, DM Aanensen, CC Carlos,
Western Pacific Surveillance and Response Journal 2021 vol. 12
Gill transcriptomic responses to toxin-producing alga Prymnesium parvum in rainbow trout Morag Clinton, Elżbieta Król, Dagoberto Sepúlveda, Nikolaj R. Andersen, Andrew Stuart Brierley, David Ellard Keith Ferrier, Per Juel Hansen, Niels Lorenzen, Samuel A. M. Martin
Frontiers in Immunology 2021 vol. 12
Impacts of jellyfish on marine cage aquaculture Morag Clinton, David Ellard Keith Ferrier, Samuel A M Martin, Andrew Stuart Brierley
ICES Journal of Marine Science 2021 vol. 78 pp. 1557–1573
Sampling the fish gill microbiome Morag Clinton, Samuel A. M. Martin, Andrew Stuart Brierley, David Ellard Keith Ferrier
BMC Microbiology 2021 vol. 21
Genome expression dynamics reveal the parasitism regulatory landscape of the root-knot nematode Meloidogyne incognita and a promoter motif associated with effector genes Martine Da Rocha, Caroline Bournaud, Julie Dazenière, Peter Jacob Thorpe, Marc Bailly-Bechet, Clément Pellegrin, Arthur Péré, Priscila Grynberg, Laetitia Perfus-Barbeoch, Sebastian Eves-van den Akker, Etienne G. J. Danchin
Genes 2021 vol. 12
Re-identification of individuals from images using spot constellations Ignacy T. De¸bicki, Lizy Mittell, Bjarni K. Kristjánsson, Camille A. Leblanc, Michael Blair Morrissey, Kasim Terzic
Royal Society Open Science 2021 vol. 8
Pan-resistome characterization of uropathogenic Escherichia coli and Klebsiella pneumoniae strains circulating in Uganda and Kenya, isolated from 2017-2018 Arun Decano, Kerry Andrea Pettigrew, Wilber Sabiiti, Derek James Sloan, Stella Neema, Joel Bazira, John Kiiru, Helen Atieno Onyango, Benon Asiimwe, Matthew Holden
Antibiotics 2021 vol. 10
A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows Nicolas Dussex, Verena E. Kutschera, Gavin R. Hunt, Russell D. Gray, Kim Rutherford, Hideaki Abe, Robert C. Fleischer, Michael Gordon Ritchie, Christian Rutz, Jochen B.Wolf, Neil J. Gemmell
Molecular Ecology 2021 vol. 30 pp. 973-986
Insights into dyslexia genetics research from the last two decades Florina Erbeli, Marianne Rice, Silvia Paracchini
Brain Sciences 2021 vol. 12
DrosoPhyla Cédric Finet, Victoria A Kassner, Antonio B Carvalho, Henry Chung, Jonathan P Day, Stephanie Day, Emily K Delaney, Francine C De Ré, Héloïse D Dufour, Eduardo Dupim, Hiroyuki F Izumitani, Thaísa B Gautério, Jessa Justen, Toru Katoh, Artyom Kopp, Shigeyuki Koshikawa, Ben Longdon, Elgion L Loreto, Maria D S Nunes, Komal K B Raja, Mark Rebeiz, Michael Gordon Ritchie, Gayane Saakyan, Tanya Sneddon, Machiko Teramoto, Venera Tyukmaeva, Thyago Vanderlinde, Emily E Wey, Thomas Werner, Thomas M Williams, Lizandra J Robe, Masanori J Toda, Ferdinand Marlétaz
Genome Biology and Evolution 2021 vol. 13
Genomic analysis of global Staphylococcus argenteus strains reveals distinct lineages with differing virulence and antibiotic resistance gene content Cosmika Goswami, Stephen Fox, Matthew Holden, Alistair Leanord, Thomas J Evans
Frontiers in Microbiology 2021 vol. 12
PHYTO-THREATS Sarah Green, David E. L. Cooke, Mike Dunn, Louise Barwell, Bethan Purse, Daniel S. Chapman, Gregory Valatin, Alexandra Schlenzig, Jane Barbrook, Tim Pettitt, Colin Price, Ana Pérez-Sierra, Debra Frederickson-Matika, Leighton Pritchard, Peter Jacob Thorpe, Peter J. A. Cock, Eva Randall, Beatrix Keillor, Mariella Marzano
Forests 2021 vol. 12
The role of multidimensional poverty in antibiotic misuse Dominique LaShari Green, Katherine Lisa Keenan, Sarah Insia Huque, Mike Kesby, Martha F. Mushi, Catherine Kansiime, Benon Asiimwe, John Kiiru, Stephen Mshana, Stella Neema, Joseph R. Mwanga, Andy Lynch, Hannah Worthington, Emmanuel Olawale Olamijuwon, Mary Abed Al Ahad, Annette Aduda, Blandina T. Mmbaga, Joel Bazira, Alison Fiona Sandeman, John Stelling, Stephen Henry Gillespie, Gibson Kibiki, Wilber Sabiti, Derek James Sloan, Matthew Holden, Hatua Consortium
SSRN Electronic Journal 2021
Specificity and sensitivity of an RNA targeting type III CRISPR complex coupled with a NucC endonuclease effector Sabine Gruschow, Catherine S Adamson, Malcolm White
Nucleic Acids Research 2021 vol. 49 pp. 13122-13134
Sex-biased demography modulates male harm across the genome Andy Gardner
Proceedings of the Royal Society of London Series B: Biological Sciences 2021 vol. 288
Neuroanatomy of the grey seal brain Nienke Hoeksema, Laura Verga, Janine Mengede, Corné van Roessel, Stella Villanueva, Anna Salazar-Casals, Ana Rubio-Garcia, Branislava Ćurčić-Blake, Sonja Vernes, Andrea Ravignani
Philosophical Transactions of the Royal Society B: Biological Sciences 2021 vol. 376
Animal personality adds complexity to the processes of divergence between sympatric morphs of Arctic charr Quentin J.-B. Horta-Lacueva, David Benhaïm, Michael Blair Morrissey, Sigurður S. Snorrason, Kalina H. Kapralova
Animal Behaviour 2021 vol. 175 pp. 57-73
Multivariate analysis of morphology, behaviour, growth and developmental timing in hybrids brings new insights into the divergence of sympatric Arctic charr morphs Quentin J.-B. Horta-Lacueva, Sigurður S. Snorrason, Michael Blair Morrissey, Camille A.-L. Leblanc, Kalina H. Kapralova
BMC Ecology and Evolution 2021 vol. 21
Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014 Manuel C Jamoralin, Silvia Argimón, Marietta L Lagrada, Alfred S Villamin, Melissa L Masim, June M Gayeta, Karis D Boehme, Agnettah M Olorosa, Sonia B Sia, Charmian M Hufano, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey, Khalil Abudahab, John Stelling, Matthew Holden, David M Aanensenb, Celia C Carlosa
Western Pacific Surveillance and Response Journal 2021 vol. 12 pp. 17-25
Toward genetic modification of plant-parasitic nematodes Olaf Kranse, Helen Beasley, Sally Adams, Andre Pires-daSilva, Christopher Bell, Catherine J Lilley, Peter E Urwin, David Bird, Eric Miska, Geert Smant, Godelieve Gheysen, John Jones, Mark Viney, Pierre Abad, Thomas R Maier, Thomas J Baum, Shahid Siddique, Valerie Williamson, Alper Akay, Sebastian Eves-van den Akker
G3: Genes, Genomes, Genetics 2021 vol. 11
Hearing sensitivity and amplitude coding in bats are differentially shaped by echolocation calls and social calls Ella Z Lattenkamp, Martina Nagy, Markus Drexl, Sonja Vernes, Lutz Wiegrebe, Mirjam Knörnschild
Proceedings of the Royal Society B: Biological Sciences 2021 vol. 288
The vocal development of the pale spear-nosed bat is dependent on auditory feedback Ella Z. Lattenkamp, Meike Linnenschmidt, Eva Mardus, Sonja Vernes, Lutz Wiegrebe, Michael Schutte
Philosophical Transactions of the Royal Society B: Biological Sciences 2021 vol. 376
Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Marie Louis, Marco Galimberti, Frederick Archer, Simon Berrow, Andrew Brownlow, Ramon Fallon, Milaja Nykänen, Joanne O'Brien, Kelly Robertson, Patricia E. Rosel, Benoit Simon-Bouhet, Daniel Wegmann, Michael Fontaine, Andrew Foote, Oscar Eduardo Gaggiotti
Science Advances 2021 vol. 7
Cooperative coinfection dynamics on clustered networks P. Mann, V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2021 vol. 103
Exact formula for bond percolation on cliques V Anne Smith, John B. O. Mitchell, Christopher Anthony Jefferson, Simon Andrew Dobson
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2021 vol. 104
Percolation in random graphs with higher-order clustering V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2021 vol. 103
Random graphs with arbitrary clustering and their applications V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2021 vol. 103
Symbiotic and antagonistic disease dynamics on clustered networks using bond percolation V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2021 vol. 104
Two-pathogen model with competition on clustered networks V Anne Smith, John B. O. Mitchell, Simon Andrew Dobson
Physical Review. E, Statistical, nonlinear, and soft matter physics 2021 vol. 103
A rare missense variant in the ATP2C2 gene is associated with language impairment and related measures Angela Martinelli, Mabel Rice, Joel B. Talcott, Shelley Smith, Muhammad Hashim Raza, Margaret J. Snowling, Charles Hulme, John Stein, Marianna E. Hayiou-Thomas, Ziarih Hawi, Lindsey Kent, Samantha J. Pitt, Dianne F. Newbury, Silvia Paracchini
Human Molecular Genetics 2021 vol. 30 pp. 1160–1171
Real-time imaging of cellular forces using optical interference Nils Michael Kronenberg, Andrew Morton, Jan Murawski, Simon John Powis, Malte Christian Gather
Nature Communications 2021 vol. 12
Bayesian Network Analysis reveals resilience of the jellyfish Aurelia aurita to an Irish Sea regime shift Emily G. Mitchell, Margaret Isabel Wallace, V Anne Smith, Amanda A. Wiesenthal, Andrew Stuart Brierley
Scientific Reports 2021 vol. 11
Dispensing antibiotics without prescription at the community pharmacies and accredited drug dispensing outlets in Tanzania Pendo M. Ndaki, Martha F. Mushi, Joseph R. Mwanga, Eveline T. Konje, Nyanda E. Ntinginya, Blandina T. Mmbaga, Katherine Lisa Keenan, Wilber Sabiiti, Mike Kesby, Manuel Fernando Benitez Paez, Alison Fiona Sandeman, Matthew Holden, Stephen E. Mshana,
Antibiotics 2021 vol. 10
Plasmodium knowlesi – clinical isolate genome sequencing to inform translational same-species model system for severe malaria Cyrus John Daneshvar, Janet Cox-Singh
Frontiers in Cellular and Infection Microbiology 2021 vol. 11
Hand preference and mathematical learning difficulties: New data from Greece, the United Kingdom, and Germany and two meta-analyses of the literature Marietta Papadatou-Pastou, Despoina-Athanasia Panagiotidou, Ursula Fischer, Silvia Paracchini, Giannis Karagiannakis
Laterality 2021 vol. Latest Articles
Handedness in Twins: Meta-Analyses Silvia Paracchini
PsyArXiv 2021
Recent advances in handedness genetics Silvia Paracchini
Symmetry 2021 vol. 13
Clinical perspectives in integrating whole genome sequencing into the investigation of healthcare and public health outbreaks – hype or help? Stephen Henry Gillespie, Kerry A. Pettigrew, Matthew Holden
Journal of Hospital Infection 2021 vol. 109 pp. 1-9
Sex-specific responses to cold in a very cold-tolerant, northern Drosophila species Tapio Envall, Michael Gordon Ritchie, Maaria Kankare
Heredity 2021 vol. 126 pp. 695–705
Editorial: Cytomegalovirus pathogenesis and host interactions Emma L. Poole, Michael Martin Nevels
Frontiers in Cellular and Infection Microbiology 2021 vol. 11
Potato cyst nematodes Globodera rostochiensis and G. pallida James Alexander Price, Danny Coyne, Vivian C. Blok, John Jones
Molecular Plant Pathology 2021 vol. 22 pp. 495-507
Variable dosage compensation is associated with female consequences of an X-linked, male-beneficial mutation Jack Gregory Rayner, Nathan William Bailey
Proceedings of the Royal Society of London Series B: Biological Sciences 2021 vol. 288
Hyperkinetic stereotyped movements in a boy with biallelic CNTNAP2 variants Marcello Scala, Midas Anijs, Roberta Battini, Francesca Madia, Valeria Capra, Paolo Scudieri, Alberto Verrotti, Federico Zara, Carlo Minetti, Sonja Vernes, Pasquale Striano
Italian Journal of Pediatrics 2021 vol. 47
Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae Peter Jacob Thorpe, Ramesh R Vetukuri, Pete E Hedley, Jenny Morris, Maximilian A Whisson, Lydia R J Welsh, Stephen C Whisson
G3: Genes, Genomes, Genetics 2021 vol. 11
Resolving the immune landscape of human prostate at a single-cell level in health and cancer Zewen Kelvin Tuong, Kevin W. Loudon, Brendan Berry, Nathan Richoz, Julia Jones, Xiao Tan, Quan Nguyen, Anne George, Satoshi Hori, Sarah Field, Andy Lynch, Katarzyna Kania, Paul Coupland, Anne Babbage, Richard Grenfell, Tristan Barrett, Anne Y. Warren, Vincent Gnanapragasam, Charlie Massie, Menna R. Clatworthy
Cell Reports 2021 vol. 37
The multi-dimensional nature of vocal learning Sonja Vernes, Buddhamas (Pralle) Kriengwatana, Veronika Beeck, Julia Fischer, Peter Lloyd Tyack, Carel ten Cate, Vincent Janik
Philosophical Transactions of the Royal Society. B, Biological Sciences 2021 vol. 376
Vocal learning in animals and humans Sonja Vernes, Vincent Janik, William Tecumseh Sherman Fitch, Peter James Bramwell Slater
Philosophical Transactions of the Royal Society. B, Biological Sciences 2021 vol. 376
The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe Megan A. Wallace, Kelsey A. Coffman, Clément Gilbert, Sanjana Ravindran, Gregory F. Albery, Jessica Abbott, Eliza Argyridou, Paola Bellosta, Andrea J. Betancourt, Hervé Colinet, Katarina Eric, Amanda Glaser-Schmitt, Sonja Grath, Mihailo Jelic, Maaria Kankare, Iryna Kozeretska, Volker Loeschcke, Catherine Montchamp-Moreau, Lino Ometto, Banu Sebnem Onder, Dorcas J. Orengo, John Parsch, Marta Pascual, Aleksandra Patenkovic, Eva Puerma, Michael Gordon Ritchie, Omar Rota-Stabelli, Mads Fristrup Schou, Svitlana Serga, Marina Stamenkovic-Radak, Marija Tanaskovic, Marija Savic Veselinovic, Jorge Vieira, Cristina P. Vieira, Martin Kapun, Thomas Flatt, Josefa González, Fabian Staubach, Darren J. Obbard
Virus Evolution 2021 vol. 7
Cold adaptation drives population genomic divergence in the ecological specialist, Drosophila montana Venera Tyukmaeva, Anneli Hoikkala, Michael Gordon Ritchie, Maaria Kankare
Molecular Ecology 2021 vol. 30 pp. 3783-3796
Experimental evolution supports signatures of sexual selection in genomic divergence Paris Veltsos, Rhonda Snook, Michael Gordon Ritchie
Evolution Letters 2021 vol. 5 pp. 214-229
DNA methylation predicts age and provides insight into exceptional longevity of bats Gerald S. Wilkinson, Danielle M. Adams, Amin Haghani, Ake T. Lu, Joseph Zoller, Charles E. Breeze, Bryan D. Arnold, Hope C. Ball, Gerald G. Carter, Lisa Noelle Cooper, Dina K. N. Dechmann, Paolo Devanna, Nicolas J. Fasel, Alexander V. Galazyuk, Linus Günther, Edward Hurme, Gareth Jones, Mirjam Knörnschild, Ella Z. Lattenkamp, Caesar Z. Li, Frieder Mayer, Josephine A. Reinhardt, Rodrigo A. Medellin, Martina Nagy, Brian Pope, Megan L. Power, Roger D. Ransome, Emma C. Teeling, Sonja Vernes, Daniel Zamora-Mejías, Joshua Zhang, Paul A. Faure, Lucas J. Greville, Steve Horvath
Nature Communications 2021 vol. 12
CamGFR v2 Edward H Williams, Thomas R Flint, Claire M Connell, Daniel Giglio, Hassal Lee, Taehoon Ha, Eva Gablenz, Nicholas J Bird, James M J Weaver, Harry Potts, Cameron T Whitley, Michael A Bookman, Andy Lynch, Hannah V Meyer, Simon Tavaré, Tobias Janowitz
Clinical Cancer Research 2021 vol. 27
Ecosystem engineers drive differing microbial community composition in intertidal estuarine sediments Irene Sarah Fortune, Andrew John Blight, Patricia Browne, Morgan Hartley, Matthew Holden, David Maxwell Paterson
PLoS ONE 2021 vol. 16
Rapid parallel adaptation despite gene flow in silent crickets Xiao Zhang, Jack Gregory Rayner, Mark Blaxter, Nathan William Bailey
Nature Communications 2021 vol. 12
The CRISPR ancillary effector Can2 is a dual-specificity nuclease potentiating type III CRISPR defence Sabine Gruschow, Shirley Graham, Tracey Gloster, Malcolm White
Nucleic Acids Research 2021 vol. 49 pp. 2777–2789
Comparative genomics of two inbred lines of the potato cyst nematode Globodera rostochiensis reveals disparate effector family-specific diversification patterns Joris J.M. van Steenbrugge, Sven van den Elsen, Martijn Holterman, Mark G. Sterken, Peter Jacob Thorpe, Aska Goverse, Geert Smant, Johannes Helder
BMC Genomics 2021 vol. 22
The Nereid on the rise B. Duygu Özpolat, Nadine Randel, Elizabeth Williams, Luis Alberto Bezares-Calderon, Gabriele Andreatta, Guillaume Balavoine, Paola Bertucci, David Ellard Keith Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Schneider, Oleg Simakov, Hernando Vergara, Michel Vervoort, Gáspár Jékely, Kristin Tessmar-Raible, Florian Raible, Detlev Arendt
EvoDevo 2021 vol. 12
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland Ana da Silva Filipe, James G. Shepherd, Thomas Williams, Joseph Hughes, Elihu Aranday-Cortes, Patawee Asamaphan, Shirin Ashraf, Carlos Balcazar, Kirstyn Brunker, Alasdair Campbell, Stephen Carmichael, Chris Davis, Rebecca Dewar, Michael D. Gallagher, Rory Gunson, Verity Hill, Antonia Ho, Ben Jackson, Edward James, Natasha Jesudason, Natasha Johnson, E. Carol McWilliam Leitch, Kathy Li, Alasdair MacLean, Daniel Mair, David A. McAllister, John T. McCrone, Sarah E. McDonald, Martin Patrick McHugh, A. Keith Morris, Jenna Nichols, Marc Niebel, Kyriaki Nomikou, Richard J. Orton, Áine O’Toole, Massimo Palmarini, Yasmin A. Parr, Andrew Rambaut, Stefan Rooke, Sharif Shaaban, Rajiv Shah, Joshua B. Singer, Katherine Smollett, Igor Starinskij, Lily Tong, Vattipally B. Sreenu, Elizabeth Wastnedge, Matthew Holden, David L. Robertson
Nature Microbiology 2021 vol. 6 pp. 112-122
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014 Jeremiah Chilam, Silvia Argimón, Marilyn T Limas, Melissa L Masim, June M Gayeta, Marietta L Lagrada, Agnettah M Olorosa, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey, Khalil Abudahab, Charmian M Hufano, Sonia B Sia, Matthew Holden, John Stelling, David M Aanensen, Celia C Carlos
Western Pacific Surveillance and Response Journal 2021 vol. 12 pp. 4-18